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In total 58  Xanthomona s strains isolated from Araceae worldwide, together with 13 other phylogenetically-related  Xanthomonas  strains, were characterized using multilocus sequence analysis based on concatenated sequences of seven single copy orthologous genes, extracted from whole genome sequences. The analysis revealed a monophyletic clade of 48 strains, 44 isolated from  Anthurium , identified as  X. phaseoli  pv.  dieffenbachiae  (Xpd) confirmed by nucleotide identity analysis. The other strains from aroids were identified as  Xanthomonas euvesicatoria  (2 strains),  X citri  (5 strains) and  Xanthomonas sacchari  (3 strains). Two TaqMan assays were designed for specific detection of Xpd, one targeting sequences of a hypothetical protein and one targeting a type I restriction endonuclease subunit S. The two assays showed similar reaction kinetics and were merged with an assay comprising an amplification and extraction control into a triplex assay. The assay was able to detect minimally 100 copies of a target sequence delivered as a gBlock, 100 fg of genomic DNA and 10 4  cells per mL in an  Anthurium  leaf extract.

european journal of plant pathology

Molecular characterization of Xanthomonas species isolated from Araceae and the development of a triplex TaqMan assay for detection of Xanthomonas phaseoli pv. dieffenbachiae