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A set of 146 single sequence repeats (SSRs) and 14 amplified fragment length polymorphism (AFLP) primer combinations were used to enrich a previouslydeveloped linkage map obtained from a (Prunus persica·P. ferganensis)·P. persica BC1 progeny. Forty-oneSSR primer pairs gave polymorphic patterns detecting42 loci. The restriction/selective primer AFLP combinationsproduced a total of 79 segregating fragments.The resulting map is composed of 216 loci covering665 cM with an average distance of 3.1 cM. Novel regionswere covered by the newly mapped loci for a totalof 159 cM. Eight linkage groups were assembled insteadof the earlier 10 as two small groups (G1a and G8b),previously independent, were joined to their respectivemajor groups (G1b and G8a). Several gaps were alsoreduced resulting in an improved saturation of the map.Twelve gaps ‡10 cm are still present. A comparativeanalysis against the Prunus reference map (71 anchorloci) pointed out an almost complete synteny andcolinearity. Six loci were not syntenic and only two werenot colinear. Genetic distances were significantly longer in our map than in the reference one

Microsatellite and AFLP markers in the Prunus persica [L. (Batsch)] × P. ferganensis BC1 linkage map: saturation and coverage improvement