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Complete genome sequence of Nocardiopsis dassonvillei type strain (IMRU 509T)
Author(s) -
Hui Sun,
Alla Lapidus,
Matt Nolan,
Susan Lucas,
Tijana Glavina Del Rio,
Hope Tice,
JanFang Cheng,
Roxane Tapia,
Cliff Han,
Lynne Goodwin,
Sam Pitluck,
Ioanna Pagani,
Natalia Ivanova,
Konstantinos Mavromatis,
Natalia Mikhailova,
Amrita Pati,
Amy Chen,
Krishna Palaniappan,
Miriam Land,
Loren Hauser,
YunJuan Chang,
Cynthia D. Jeffries,
Olivier Duplex Ngatchou Djao,
Manfred Rohde,
Johannes Sikorski,
Markus Göker,
Tanja Woyke,
James Bristow,
Jonathan A. Eisen,
Victor Markowitz,
Philip Hugenholtz,
Nikos C. Kyrpides,
HansPeter Klenk
Publication year - 2010
Publication title -
standards in genomic sciences
Language(s) - English
Resource type - Journals
ISSN - 1944-3277
DOI - 10.4056/sigs.1363462
Subject(s) - biology , genome , whole genome sequencing , genetics , type species , gene , archaea , genome project , genus , computational biology , evolutionary biology , botany
Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 is the type species of the genus Nocardiopsis, which in turn is the type genus of the family Nocardiopsaceae. This species is of interest because of its ecological versatility. Members of N. dassonvillei have been isolated from a large variety of natural habitats such as soil and marine sediments, from different plant and animal materials as well as from human patients. Moreover, representatives of the genus Nocardiopsis participate actively in biopolymer degradation. This is the first complete genome sequence in the family Nocardiopsaceae. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 6,543,312 bp long genome consist of a 5.77 Mbp chromosome and a 0.78 Mbp plasmid and with its 5,570 protein-coding and 77 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

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