A 1 H and 31 P NMR study of cis ‐Pt(NH 3 ) 2 [d(CpGpG)‐ N7 (2),N7 (3) ] The influence of a 5′‐terminal cytosine, on the structure of the cis ‐Pt(NH 3 ) 2 [d(GpG)‐ N7,N7 ] instrastrand cross‐link
Author(s) -
HARTOG Jeroen H. J.,
ALTONA Cornelis,
MAREL Gijs A.,
REEDIJK Jan
Publication year - 1985
Publication title -
european journal of biochemistry
Language(s) - English
Resource type - Journals
eISSN - 1432-1033
pISSN - 0014-2956
DOI - 10.1111/j.1432-1033.1985.tb08760.x
Subject(s) - chemistry , adduct , guanine , proton , crystallography , chemical shift , stacking , trimer , intramolecular force , stereochemistry , nuclear magnetic resonance spectroscopy , nucleotide , physics , dimer , organic chemistry , gene , quantum mechanics , biochemistry
Proton NMR studies at 300 MHz and 500 MHz have been carried out on the trinucleoside bisphosphate d(CpGpG) and on cis ‐Pt(NH 3 ) 2 [d(CpGpG)‐ N7 (2),N7 (3) ] [abbreviated as d(CpGpGp) · cis Pt]. For the Pt adduct, 13 C and 31 P NMR was also used for characterizing the oligonucleotide. d(CpGpG) appears to revert to a B‐DNA‐type single helix at lower temperatures. The relatively small concentration dependence of the proton chemical shifts, in comparison with shifts due to intramolecular stacking effects, indicates that the compound is essentially single‐stranded. In d(CpGpGp) · cis Pt, the first nucleoside, C(1), stacks well on top of the second, G(2), despite the N conformation of the G(2) sugar ring. The platinated GpG part in this trimer adopts largely the same structure as in cis ‐Pt(NH 3 ) 2 [d(GpGpG)‐ N7 (1),N7 (2) ] [den Hartog, J. H. J., et al. (1982) Nucleic Acids Res. 10 , 4715–4730]. Main differences however, are changes in H8 chemical shifts and a 0.6‐ppm downfield shift of the third nucleotide phosphorus, P(3), in d(CpGpGp) · cis Pt with respect to P(2) in d(GpG) · cis Pt. The latter shift change is likely to be induced by a structural alteration, caused by stacking of C(1) on top of G(2). Also, the large chemical shift differences between the two H8 protons in d(NpGpG) · cis Pt fragments is discussed; the deviation from a mirror symmetry of the two guanine bases seems to be the main origin of this effect. The chemical shift changes, observed in the proton and phosphorus NMR chemical shift temperature and chemical shift pH profiles have been explained in terms of stack‐destack equilibria changes.
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