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Structural alphabets for conformational analysis of nucleic acids available at dnatco.datmos.org
Author(s) -
Černý Jiří,
Božíková Paulína,
Malý Michal,
Tykač Michal,
Biedermannová Lada,
Schneider Bohdan
Publication year - 2020
Publication title -
acta crystallographica section d
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 7.374
H-Index - 138
ISSN - 2059-7983
DOI - 10.1107/s2059798320009389
Subject(s) - nucleic acid , protein data bank (rcsb pdb) , computer science , upload , nucleic acid structure , rna , dna , alphabet , computational biology , chemistry , theoretical computer science , biochemistry , biology , world wide web , gene , linguistics , philosophy
A detailed description of the dnatco.datmos.org web server implementing the universal structural alphabet of nucleic acids is presented. It is capable of processing any mmCIF‐ or PDB‐formatted files containing DNA or RNA molecules; these can either be uploaded by the user or supplied as the wwPDB or PDB‐REDO structural database access code. The web server performs an assignment of the nucleic acid conformations and presents the results for the intuitive annotation, validation, modeling and refinement of nucleic acids.