Simple algorithm for a maximum‐likelihood SAD function
Author(s) -
McCoy Airlie J.,
Storoni Laurent C.,
Read Randy J.
Publication year - 2004
Publication title -
acta crystallographica section d
Language(s) - English
Resource type - Journals
ISSN - 1399-0047
DOI - 10.1107/s0907444904009990
Subject(s) - likelihood function , simple (philosophy) , function (biology) , algorithm , expression (computer science) , maximum likelihood , multivariate statistics , multivariate normal distribution , mathematics , computer science , statistics , estimation theory , programming language , philosophy , biology , evolutionary biology , epistemology
Recently, the multivariate complex normal distribution has been used to develop a maximum‐likelihood probability function for single‐wavelength anomalous diffraction phasing and refinement of heavy‐atom parameters [Pannu & Read (2004), Acta Cryst. D 60 , 22–27]. The function accounts explicitly for the correlations between the observed and calculated Friedel mates and their errors. However, the method of derivation of the equation described by Pannu & Read (2004) leads to a complicated likelihood expression that suffers from a number of algorithmic limitations. Here, an alternative derivation of the P SAD function is described that leads to simplified algorithmic requirements and that allows an intuitive understanding of the expression.
Accelerating Research
Robert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom
Address
John Eccles HouseRobert Robinson Avenue,
Oxford Science Park, Oxford
OX4 4GP, United Kingdom