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This study investigated genetic diversity of the giant tiger shrimp (Penaeus   monodon), an economically important penaeid species in Indonesia, using 558   base pairs of the mitochondrial cytochrome c oxidase Subunit I (COI) gene. A   total of 10 samples were collected from three populations throughout   Indonesia and three samples were taken from hatchery. The mitochondrial COI   results found high levels of genetic differentiation. From Bayesian tree   building method there were two clades on phylogenetic tree with high   posterior probability value 1.00. COI mt-DNA analyses revealed that there   were six haplotypes in which four haplotypes in clade A and two haplotypes   in clade B. Divergences of COI between two clades showed an average 6.9%   (range=6.7%-7.6%), while genetic distance within clade A 0.2% (range=0-0.5%)   and within clade B 0.3% (range=0-1.1%). Results from this study suggest the   occurrence of two cryptic species in the Penaeus monodon from Indonesia.

Preliminary findings of cryptic diversity of the giant tiger shrimp (Penaeus monodon Fabricius, 1798) in Indonesia inferred from COI mitochondrial DNA