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Considering the need for the Brazilian government to develop tools for environmental monitoring for biodiversity conservancy purposes in the national protected areas system, this paper focuses on determining reference site metrics (or baselines) for adapting the Index of Biotic Integrity (IBI) based on the fish assemblages in the Pantanal National Park (PNP). The habitats in the PNP were grouped into four categories: main rivers, corixos (channels connecting the floodplain), permanent bays, and temporary bays. Fish samplings were performed at 12 points during the dry season (Oct-Nov 2010 and 2011). 146 fish species were identified from the total 18,954 individuals collected with standardized fishing gear. There was no association between the structure of the fish assemblage and categories, suggesting a theory on homogeneity of habitats. The final IBIPNP consists of nine metrics, most of them were framed in excellent class, some in fair, and none in poor. There was no significant difference in IBIPNP scores between the two sampled years. This approach provides a direct application for wetland management purposes

The protected areas system in Brazil as a baseline condition for wetlands management and fish conservancy: the example of the Pantanal National Park