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Two species have been confused under the name Epidendrum brenesii Schltr., both were used in the original description and drawing of the type. The purple-flowered species, has been commonly known as E. brenesii , a specimen collected by Brenes close to the original locus typicus is therefore used to neotypify the species. The yellow-flowered species is described as Epidendrum sotoanum Karremans & Hagsater, in honor of the late Mexican botanist Miguel Angel Soto Arenas.

Confusion in <i>Epidendrum brenesii</i> Schltr ., and a new Costa Rican species: <i>Epidendrum sotoanum</i> (Orchidaceae)