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Background    Vibrio campbellii  is widely distributed in the marine environment and is an important pathogen of aquatic organisms such as shrimp, fish, and mollusks. An isolate of  V. campbellii  carrying the  pirAB    vp   gene, causing acute hepatopancreatic necrosis disease (AHPND), has been reported. There are no previous reports about the complete genome of  V. campbellii  causing AHPND (VC AHPND ). To extend our understanding of the pathogenesis of VC AHPND  at the genomic level, the genome of  V. campbellii  20130629003S01 isolated from a shrimp with AHPND was sequenced and analysed.    Results  The complete genome sequence of  V. campbellii  20130629003S01 was generated using the PacBio RSII platform with single molecule, real-time sequencing. The 20130629003S01 strain consists of two circular chromosomes (3,621,712 bp in chromosome 1 and 2,245,751 bp in chromosome 2) and four plasmids of 70,066, 204,531, 143,140, and 86,121 bp. The genome contains a total of 5855 protein coding genes, 134 tRNA genes and 37 rRNA genes. The average nucleotide identity value of 20130629003S01 and other reference  V. campbellii  strains was 97.46%, suggesting that they are closely related.    Conclusions  The genome sequence of  V. campbellii  20130629003S01 and its comparative analysis with other  V. campbellii  strains that we present here are important for a better understanding of the genomic characteristics of VC AHPND .    Electronic supplementary material  The online version of this article (doi:10.1186/s13099-017-0180-2) contains supplementary material, which is available to authorized users.

Complete genome sequence of Vibrio campbellii strain 20130629003S01 isolated from shrimp with acute hepatopancreatic necrosis disease