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We report here the draft genome sequence of Xanthomonas axonopodis pv. allii strain CFBP 6369, the causal agent of bacterial blight of onion. The draft genome has a size of 5,425,942 bp and a G+C content of 64.4%.

Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369