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Bordetella holmesii , a human pathogen, can confound the diagnosis of respiratory illness caused by  Bordetella pertussis . We present the draft genome sequences of two  B. holmesii  isolates, one from blood, F627, and one from the nasopharynx, H558. Interestingly, important virulence genes that are present in  B. pertussis  are not found in  B. holmesii .

Draft Genome Sequences of Bordetella holmesii Strains from Blood (F627) and Nasopharynx (H558)