Open AccessA polyphasic approach for the differentiation of environmental Vibrio isolates from temperate waters
Author(s) -
Oberbeckmann Sonja,
Wichels Antje,
Maier Thomas,
Kostrzewa Markus,
Raffelberg Sarah,
Gerdts Gunnar
Publication year - 2011
Publication title -
fems microbiology ecology
Language(s) - English
Resource type - Journals
SCImago Journal Rank - 1.377
H-Index - 155
eISSN - 1574-6941
pISSN - 0168-6496
DOI - 10.1111/j.1574-6941.2010.00998.x
Subject(s) - biology , rpob , vibrio alginolyticus , vibrio parahaemolyticus , vibrio , microbiology and biotechnology , context (archaeology) , vibrionaceae , arcobacter , 16s ribosomal rna , ecology , gene , genetics , bacteria , paleontology
Abstract Climate change and marine traffic lead to changing species communities in the oceans. Due to increasing seawater temperatures, pathogenic Vibrio species could become significant even in temperate waters. We classified mesophilic Vibrio isolates from the German Bight (North Sea) using a polyphasic approach with special emphasis on Vibrio parahaemolyticus . Matrix‐assisted laser desorption/ionization time‐of‐flight MS was used as a primary screen to classify isolates, 16S rRNA gene and rpoB gene sequencing to identify species. Potential V. parahaemolyticus isolates were screened for regulatory or virulence‐related genes ( toxR, tlh, tdh, trh ). To investigate genomic diversity, we applied repetitive‐sequence‐based PCRs. Results were evaluated and methods compared using multivariate statistical analysis. Most isolates were classified as V. parahaemolyticus or Vibrio alginolyticus . Reliable differentiation between both species was achieved by rpoB sequencing and toxR detection. Among the fingerprinting methods, ERIC‐PCR showed the highest discriminatory power, displaying three separated clusters. These clusters represent the species V. parahaemolyticus, V. alginolyticus and one group in between. The frequent detection of V. parahaemolyticus in the German Bight reveals the urgency for further monitoring. In this context, a polyphasic approach, such as defined in this study, is needed to differentiate populations of V. parahaemolyticus and V. alginolyticus .