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Reliable identification of Staphylococcus aureus is of major concern in clinical microbiological diagnostics. The nuc gene, which encodes thermonuclease, is widely used as a specific target for the identification of S. aureus by PCR (Maes et al., 2002; Louie et al., 2002). Numerous in-house PCRbased assays targeting the nuc gene alone or in combination with the mecA gene have been described for fast screening or identification of meticillin-susceptible S. aureus (MSSA) and meticillin-resistant S. aureus (MRSA) (Elsayed et al., 2003; Costa et al., 2005; Thomas et al., 2007).

Variations in the Staphylococcus aureus-specific nuc gene can potentially lead to misidentification of meticillin-susceptible and -resistant S. aureus