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The genus  Allium  comprises some of the most commonly consumed food crops worldwide. The chloroplast genomes of  A. sacculiferum ,  A. thunbergii , and  A. taquetii  are 152,444, 153,459, and 154,056 bp circular molecular genomes, respectively. The annotation results revealed the presence of 132 (89 protein-coding, 35 tRNA, and eight rRNA), 132 (86 protein-coding, 38 tRNA, and eight rRNA), and 132 (86 protein-coding, 38 tRNA, and eight rRNA) genes with 36.78%, 36.83%, and 36.88% total GC content in each genome, respectively. The chloroplast genome of each  Allium  species contains an 81,254, 82,473, and 83,068 bp LSC region, an 18,176, 18,006, and 17,958 bp SSC region, and a pair of 26,507, 26,490, and 26,515 bp IR regions, respectively. Phylogenetic analysis based on the 21 complete chloroplast genomes indicates that  A. sacculiferum  is closely related to  A. koreanum ;  A. thunbergii  and  A taquetii  are closely related to  A. hookeri . This study shows that the three  Allium  species are Korean crop wild relatives that may be used to develop new  Allium  varieties in the future.

The complete chloroplast genomes of Allium sacculiferum , A. thunbergii , and A. taquetii (Amaryllidaceae) from Korea